fmrii fMRI Modelling Library

This C++ library provides a number of models for working with Functional Magnetic Resonance Imaging (fMRI) data. At this stage it provides:

the regular and log space balloon models,
simple neural models,
simple experimental input models, and
compound models which combine any number of the above.

All of the models are compatible with probabilistic methods provided by the dysii Dynamic Systems Library (http://www.indii.org/software/dysii/) for model fitting and parameter estimation.

Features are added to the library as needed, so that it does lack some completeness. What is included, however, is well documented and tested, and may be considered fairly sound for research purposes.

The library has been optimised for performance, while maintaining a modularity and generality that makes it suitable for a wide range of applications within the fMRI domain.

Installation

For requirements and installation instructions, see the README.txt file included in the distribution.

Getting started

To compile a program using the library, link in the fmrii library along with dysii and its required libraries. See the dysii documentation for more information on these.

Browse through the documentation to see the features available. Starting at the namespaces page and working down is recommended. All classes are thoroughly documented, with examples of use included in many cases, and references to further resources with more detailed explanation where available.

Further information

For further information see the website (http://www.indii.org/software/fmrii/) or contact the author, Lawrence Murray (lawrence@indii.org).

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