fmrii fMRI Modelling Library

This C++ library provides a number of models for working with Functional Magnetic Resonance Imaging (fMRI) data. At this stage it provides:

• the regular and log space balloon models,
• simple neural models,
• simple experimental input models, and
• compound models which combine any number of the above.

All of the models are compatible with probabilistic methods provided by the dysii Dynamic Systems Library for model fitting and parameter estimation.

Features are added to the library as needed, so that it does lack some completeness. What is included, however, is well documented and tested, and may be considered fairly sound for research purposes.

The library has been optimised for performance, while maintaining a modularity and generality that makes it suitable for a wide range of applications within the fMRI domain.

I’ve added a draft version of the paper Continuous Time Particle Filtering for fMRI to the research page, to be presented as a poster at NIPS 2007. Note that this version of the paper is not available in the conference pre-proceedings. The work makes use of both the dysii Dynamic Systems Library for distributed/parallel particle […]

A minor update to the fmrii fMRI Modelling Library has been released, bringing it up to date with the latest version (1.1.0) of the dysii Dynamic Systems Library.

Forums are now available, particularly for discussion of Tint, but anything goes really. This should better facilitate feature requests, bug reports, support and so forth, rather than relying only on comments to my posts (like this one…). Please feel free to contribute!
I’ll pretty up the style at some point to match the rest of the […]